Updated the upload and download functions to handle kilosort outputs from BCI code and kilosort-session in bnd. Have not implemented validation for kilosort output yet.
I'm a bit confused about the locations. When you copy from remote to local, why do you assume that the Kilosort folders are in the raw probe folders? I think they should always be in processed.
Do you want to add validation of the kilosort output before copying?
Please add tests for the added functionality so that we know it's working and keeps working as we change things.
The existing tests are not also passing, probably because the arguments of some functions were changed, but calls are not adjusted in the tests. Please adjust those calls -- maybe the test cases themselves will also be have to changed.
Updated the upload and download functions to handle kilosort outputs from BCI code and kilosort-session in bnd. Have not implemented validation for kilosort output yet.