Open aprilaugust opened 4 years ago
jcasey-beamio
commented
4 years ago Hello, This is an issue we need to fix. Currently all tests are bundled within the project. When sphinx tries to build the docs it also tries to run all the tests, some of which rely on external data that you won't have. If you move the "test_runner" directory out of the project and try to build again it will likely work. If that doesn't work we can try to coordinate a way to get you docs, maybe through email.
aprilaugust
commented
4 years ago Hi @jcasey-beamio,
I'm very glad to receive your message. I follow your suggestion & remove "test_runner", then build again. Unfortunately, it still doesn't work yet.
Screenshot:
I work on orthorectification for hyperspectral images. Would you please give some code examples for this task?
Or would you please mind helping to provide the docs via my email (khoanguyen07ts@gmail.com)? I highly appreciate your support.
Thank you & Happy New Year :)) Best, Khoa
Thanks a lot for your great efforts for building resippy. I have tried to generate documents based on your README guide. All package dependencies are installed. Here is my system spec.
And here is the errors when I
sudo make htmlLook like there is no sample images for testing only. How can I solve this problem?(resippy) ndk@ndk-X1:~/Downloads/resippy/docs$ sudo make html [sudo] password for ndk: Creating file _modules/resippy.rst. Creating file _modules/resippy.image_objects.rst. Creating file _modules/resippy.image_objects.earth_overhead.rst. Creating file _modules/resippy.image_objects.earth_overhead.digital_globe.rst. Creating file _modules/resippy.image_objects.earth_overhead.digital_globe.view_ready_stereo.rst. Creating file _modules/resippy.image_objects.earth_overhead.earth_overhead_point_calculators.rst. Creating file _modules/resippy.image_objects.earth_overhead.geotiff.rst. Creating file _modules/resippy.image_objects.earth_overhead.micasense.rst. Creating file _modules/resippy.image_objects.earth_overhead.physical_camera.rst. Creating file _modules/resippy.image_objects.envi.rst. Creating file _modules/resippy.image_recognition.rst. Creating file _modules/resippy.image_recognition.neural_net_model_scoring.rst. Creating file _modules/resippy.image_recognition.neural_net_model_training.rst. Creating file _modules/resippy.photogrammetry.rst. Creating file _modules/resippy.photogrammetry.dem.rst. Creating file _modules/resippy.photogrammetry.nav.rst. Creating file _modules/resippy.spectral.rst. Creating file _modules/resippy.spectral.spectrum_factories.rst. Creating file _modules/resippy.spectral.spectrum_factories.SVC.rst. Creating file _modules/resippy.spectral.spectrum_factories.SVC.ascii.rst. Creating file _modules/resippy.spectral.spectrum_factories.csv.rst. Creating file _modules/resippy.spectral.spectrum_factories.csv.ascii.rst. Creating file _modules/resippy.spectral.spectrum_factories.envi.rst. Creating file _modules/resippy.spectral.spectrum_factories.envi.ascii.rst. Creating file _modules/resippy.spectral.spectrum_factories.usgs.rst. Creating file _modules/resippy.spectral.spectrum_factories.usgs.ascii.rst. Creating file _modules/resippy.test_runner.rst. Creating file _modules/resippy.test_runner.demo_tests.rst. Creating file _modules/resippy.test_runner.demos.rst. Creating file _modules/resippy.test_runner.tests.rst. Creating file _modules/resippy.test_runner.timings.rst. Creating file _modules/resippy.utils.rst. Creating file _modules/resippy.utils.image_utils.rst. Creating file _modules/resippy.utils.units.rst. Creating file _modules/modules.rst. Running Sphinx v1.3.6 loading pickled environment... not yet created building [mo]: targets for 0 po files that are out of date building [html]: targets for 37 source files that are out of date updating environment: 37 added, 0 changed, 0 removed TEST CHIPPER TESTS [ 75%] _modules/resippy.test_runner
E E E E E E SPECTRUM FACTORY TEST: ASD E STARTING SPECTRUM FACTORY TEST: AVIRIS E
ERROR: test_bands (test_chipper.TestChipper)
Traceback (most recent call last): File "/home/ndk/Downloads/resippy/resippy/test_runner/demo_tests/test_chipper.py", line 21, in setUp self.png_image_data = imread(self.png_fullpath) File "/usr/local/lib/python3.5/dist-packages/imageio/core/functions.py", line 264, in imread reader = read(uri, format, "i", kwargs) File "/usr/local/lib/python3.5/dist-packages/imageio/core/functions.py", line 173, in get_reader request = Request(uri, "r" + mode, kwargs) File "/usr/local/lib/python3.5/dist-packages/imageio/core/request.py", line 126, in init self._parse_uri(uri) File "/usr/local/lib/python3.5/dist-packages/imageio/core/request.py", line 278, in _parse_uri raise FileNotFoundError("No such file: '%s'" % fn) FileNotFoundError: No such file: '/home/ndk/Data/resippy_demo_data/image_data/overhead_vehicle_data/Potsdam_ISPRS/top_potsdam_2_14_RGB.png'
====================================================================== ERROR: test_chip_by_centers (test_chipper.TestChipper)
Traceback (most recent call last): File "/home/ndk/Downloads/resippy/resippy/test_runner/demo_tests/test_chipper.py", line 21, in setUp self.png_image_data = imread(self.png_fullpath) File "/usr/local/lib/python3.5/dist-packages/imageio/core/functions.py", line 264, in imread reader = read(uri, format, "i", kwargs) File "/usr/local/lib/python3.5/dist-packages/imageio/core/functions.py", line 173, in get_reader request = Request(uri, "r" + mode, kwargs) File "/usr/local/lib/python3.5/dist-packages/imageio/core/request.py", line 126, in init self._parse_uri(uri) File "/usr/local/lib/python3.5/dist-packages/imageio/core/request.py", line 278, in _parse_uri raise FileNotFoundError("No such file: '%s'" % fn) FileNotFoundError: No such file: '/home/ndk/Data/resippy_demo_data/image_data/overhead_vehicle_data/Potsdam_ISPRS/top_potsdam_2_14_RGB.png'
====================================================================== ERROR: test_grayscale (test_chipper.TestChipper)
Traceback (most recent call last): File "/home/ndk/Downloads/resippy/resippy/test_runner/demo_tests/test_chipper.py", line 21, in setUp self.png_image_data = imread(self.png_fullpath) File "/usr/local/lib/python3.5/dist-packages/imageio/core/functions.py", line 264, in imread reader = read(uri, format, "i", kwargs) File "/usr/local/lib/python3.5/dist-packages/imageio/core/functions.py", line 173, in get_reader request = Request(uri, "r" + mode, kwargs) File "/usr/local/lib/python3.5/dist-packages/imageio/core/request.py", line 126, in init self._parse_uri(uri) File "/usr/local/lib/python3.5/dist-packages/imageio/core/request.py", line 278, in _parse_uri raise FileNotFoundError("No such file: '%s'" % fn) FileNotFoundError: No such file: '/home/ndk/Data/resippy_demo_data/image_data/overhead_vehicle_data/Potsdam_ISPRS/top_potsdam_2_14_RGB.png'
====================================================================== ERROR: test_keep_within_bounds (test_chipper.TestChipper)
Traceback (most recent call last): File "/home/ndk/Downloads/resippy/resippy/test_runner/demo_tests/test_chipper.py", line 21, in setUp self.png_image_data = imread(self.png_fullpath) File "/usr/local/lib/python3.5/dist-packages/imageio/core/functions.py", line 264, in imread reader = read(uri, format, "i", kwargs) File "/usr/local/lib/python3.5/dist-packages/imageio/core/functions.py", line 173, in get_reader request = Request(uri, "r" + mode, kwargs) File "/usr/local/lib/python3.5/dist-packages/imageio/core/request.py", line 126, in init self._parse_uri(uri) File "/usr/local/lib/python3.5/dist-packages/imageio/core/request.py", line 278, in _parse_uri raise FileNotFoundError("No such file: '%s'" % fn) FileNotFoundError: No such file: '/home/ndk/Data/resippy_demo_data/image_data/overhead_vehicle_data/Potsdam_ISPRS/top_potsdam_2_14_RGB.png'
====================================================================== ERROR: test_lower_right (test_chipper.TestChipper)
Traceback (most recent call last): File "/home/ndk/Downloads/resippy/resippy/test_runner/demo_tests/test_chipper.py", line 21, in setUp self.png_image_data = imread(self.png_fullpath) File "/usr/local/lib/python3.5/dist-packages/imageio/core/functions.py", line 264, in imread reader = read(uri, format, "i", kwargs) File "/usr/local/lib/python3.5/dist-packages/imageio/core/functions.py", line 173, in get_reader request = Request(uri, "r" + mode, kwargs) File "/usr/local/lib/python3.5/dist-packages/imageio/core/request.py", line 126, in init self._parse_uri(uri) File "/usr/local/lib/python3.5/dist-packages/imageio/core/request.py", line 278, in _parse_uri raise FileNotFoundError("No such file: '%s'" % fn) FileNotFoundError: No such file: '/home/ndk/Data/resippy_demo_data/image_data/overhead_vehicle_data/Potsdam_ISPRS/top_potsdam_2_14_RGB.png'
====================================================================== ERROR: test_overlap (test_chipper.TestChipper)
Traceback (most recent call last): File "/home/ndk/Downloads/resippy/resippy/test_runner/demo_tests/test_chipper.py", line 21, in setUp self.png_image_data = imread(self.png_fullpath) File "/usr/local/lib/python3.5/dist-packages/imageio/core/functions.py", line 264, in imread reader = read(uri, format, "i", kwargs) File "/usr/local/lib/python3.5/dist-packages/imageio/core/functions.py", line 173, in get_reader request = Request(uri, "r" + mode, kwargs) File "/usr/local/lib/python3.5/dist-packages/imageio/core/request.py", line 126, in init self._parse_uri(uri) File "/usr/local/lib/python3.5/dist-packages/imageio/core/request.py", line 278, in _parse_uri raise FileNotFoundError("No such file: '%s'" % fn) FileNotFoundError: No such file: '/home/ndk/Data/resippy_demo_data/image_data/overhead_vehicle_data/Potsdam_ISPRS/top_potsdam_2_14_RGB.png'
====================================================================== ERROR: test_aviris (test_spectral_factories.TestASDReader)
Traceback (most recent call last): File "/home/ndk/Downloads/resippy/resippy/test_runner/demo_tests/test_spectral_factories.py", line 79, in test_aviris fullpath = glob.glob(spectrum_dir + "/" + self.test_spectrum_fname_part + "")[0] IndexError: list index out of range
====================================================================== ERROR: test_aviris (test_spectral_factories.TestAvirisReader)
Traceback (most recent call last): File "/home/ndk/Downloads/resippy/resippy/test_runner/demo_tests/test_spectral_factories.py", line 40, in test_aviris fullpath = glob.glob(spectrum_dir + "/" + self.test_spectrum_fname_part + "")[0] IndexError: list index out of range
Ran 8 tests in 0.005s
FAILED (errors=8) SHAPE CONSISTENCY TEST
shape consistency test passed microflicks unit test passed .microns unit test passed .Fsetting fixture roll to 5 degrees and camera boresight roll to -5 degrees results in a zero camera roation roll boresight test passed. .setting fixture yaw to 5 degrees and camera boresight yaw to -5 degrees results in a zero camera roation pitch boresight test passed. .setting fixture to 5 degrees and camera boresight yaw to -5 degrees results in a zero camera rotation yaw boresight test passed. ./home/ndk/Downloads/resippy/resippy/image_objects/earth_overhead/earth_overhead_point_calculators/abstract_earth_overhead_point_calc.py:250: RuntimeWarning: overflow encountered in square np.square(machine_pixels_lat_y_diff) > np.square(d_pixel))[0])[0] positive pitch results in camera center pointing to a higher latitude makes sense by right-hand-rule conventions. a positive y lever arm offset with a positive roll results in the camera moving higher in altitude and lower in latitude. test passed. ./home/ndk/Downloads/resippy/resippy/image_objects/earth_overhead/earth_overhead_point_calculators/abstract_earth_overhead_point_calc.py:244: RuntimeWarning: overflow encountered in square lon_gt1_pixel_index = (np.where(np.square(machine_pixels_lon_x_diff) + /home/ndk/Downloads/resippy/resippy/image_objects/earth_overhead/earth_overhead_point_calculators/abstract_earth_overhead_point_calc.py:245: RuntimeWarning: overflow encountered in square np.square(machine_pixels_lon_y_diff) > np.square(d_pixel))[0])[0] /home/ndk/Downloads/resippy/resippy/image_objects/earth_overhead/earth_overhead_point_calculators/abstract_earth_overhead_point_calc.py:245: RuntimeWarning: overflow encountered in add np.square(machine_pixels_lon_y_diff) > np.square(d_pixel))[0])[0] /home/ndk/Downloads/resippy/resippy/image_objects/earth_overhead/earth_overhead_point_calculators/abstract_earth_overhead_point_calc.py:249: RuntimeWarning: overflow encountered in square lat_gt1_pixel_index = (np.where(np.square(machine_pixels_lat_x_diff) + /home/ndk/Downloads/resippy/resippy/image_objects/earth_overhead/earth_overhead_point_calculators/abstract_earth_overhead_point_calc.py:250: RuntimeWarning: overflow encountered in add np.square(machine_pixels_lat_y_diff) > np.square(d_pixel))[0])[0] last pixel in the array is in the positive longitude direction at roll=0, pitch=0, yaw=0 a positive yaw rotation results seem correct from the perspective of pixel shift a positive yaw moves a camera originally located at (1, 0, 0) relative to the fixture to a greater y location and lower x location. yaw rotation tests passed. .positive roll results in camera center pointing to a higher latitude makes sense by right-hand-rule conventions. a positive y lever arm offset with a positive roll results in the camera moving higher in altitude and lower in latitude. test passed. .created shapely polygon, bounds are correct. geom_utils bounds test passed. ..datatype tests passed .image from from numpy array test passed .offsets solver test passed .solved for case where omega is positive, phi is positive, kappa is positive. solved for case where omega is positive, phi is positive, kappa is negative. solved for case where omega is positive, phi is negative, kappa is positive. solved for case where omega is positive, phi is negative, kappa is negative. solved for case where omega is negative, phi is positive, kappa is positive. solved for case where omega is negative, phi is positive, kappa is negative. solved for case where omega is negative, phi is negative, kappa is positive. solved for case where omega is negative, phi is negative, kappa is negative. .reproject geometry test passed .shift by meters test passed ..solved values for omega, phi and kappa are within 1.e-15 .confirming rotation order for standard photogrammetric operations: the correct order of operations for: (first rotation) omega, then (second rotation) phi, then (third rotation) kapa is: m_kappa @ m_phi @ m_omega or np.matmul(m_kappa, np.matmul(m_phi, m_omega)) . ACE TEST 1D 1D ACE TEST PASSED . ACE TEST 2D . COVARIANCE EQUALIZATION TARGET DETECTION TEST COVARIANCE EQUALIZATION TARGET DETECTION TEST PASSED . COVARIANCE EQUALIZATION TEST COVARIANCE EQUALIZATION TEST PASSED . FLATTEN IMAGE CUBE TEST flattening and unflattening image cube matches with original . MASKED COVARIANCE TEST 1D MASKED_COVAR_1D TEST PASSED . MASKED COVARIANCE TEST 2D MASKED COVAR 2D TEST PASSED . MASKED MEAN TEST 1D MASKED MEAN TEST 1D - TEST PASSED . MASKED MEAN TEST 2D . RX ANAMOLY TEST 1D 1d rx passed
. RX ANAMOLY TEST 2D . SAM TEST 1D 1-D SAM TEST PASSED . SAM TEST 2D 2d sam test passed. . SAM / ACE EQUALITY TEST WHEN INVERSE COVARIANCE IS IDENTITY ACE / SAM comparison test passed. . SAM / ACE COMPARISON AND SANITY CHECK TEST SAM / ACE SANITY CHECK TEST PASSED ..
FAIL: test_fixture_pitch_boresight (test_fixtured_camera.TestFixturedCamera)
Traceback (most recent call last): File "/home/ndk/Downloads/resippy/resippy/test_runner/tests/test_fixtured_camera.py", line 37, in test_fixture_pitch_boresight assert np.isclose(roll, 0) AssertionError
Ran 36 tests in 3.489s
FAILED (failures=1) TEST CHIPPER TESTS [ 78%] _modules/resippy.test_runner.demo_tests
ERROR 4: /home/ndk/Data/resippy_demo_data/image_data/digital_globe/Tripoli_View-Ready_Stereo_8_Band_Bundle_30cm/056082094030/056082094030_01_P001_MUL/15AUG31100732-M2AS-056082094030_01_P001.TIF: No such file or directory ERROR 4: /home/ndk/Data/resippy_demo_data/image_data/digital_globe/Tripoli_View-Ready_Stereo_8_Band_Bundle_30cm/056082094030/056082094030_01_P001_MUL/15AUG31100732-M2AS-056082094030_01_P001.TIF: No such file or directory SHAPE CONSISTENCY TEST3%] _modules/resippy.test_runner.tests
shape consistency test passed reading sources... [100%] index
Sphinx error: master file /home/ndk/Downloads/resippy/docs/contents.rst not found Makefile:22: recipe for target 'html' failed make: *** [html] Error 1
And here is the result doc. Where can I find examples?
I highly appreciate for any of your support. Thank you.