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BecksLab
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EcologicalNetworksDynamics.jl
A simulator for ecological dynamics written in Julia.
GNU Affero General Public License v3.0
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Simulation output utils: only alive species?
#112
alaindanet
opened
1 year ago
4
Make subfunctions for trophic structure analysis
#111
alaindanet
opened
1 year ago
0
Extend `extinct_species()`
#110
ismael-lajaaiti
opened
1 year ago
9
Analysis functions for the structure of non-trophic interactions.
#109
ismael-lajaaiti
opened
1 year ago
1
Boost non-trophic interactions.
#108
iago-lito
opened
1 year ago
0
First use cases.
#107
ismael-lajaaiti
closed
1 year ago
2
Register as official Julia package name
#106
iago-lito
closed
7 months ago
8
Make the repo public.
#105
iago-lito
closed
7 months ago
2
Rename package to ` EcologicalNetworksDynamics.jl `
#104
iago-lito
closed
1 year ago
0
Fix customizability of temperature dependence parameters.
#103
hanamayall
closed
1 year ago
1
Group doctests into chunks
#102
alaindanet
opened
1 year ago
1
Licence under GPL-3
#101
iago-lito
closed
7 months ago
0
Rename repo to `EcologicalNetworksDynamics.jl`.
#100
iago-lito
closed
1 year ago
0
Document boost options in dedicated man page.
#99
iago-lito
closed
1 year ago
4
Parameter name `α` refers both to linear functional response and producer competition.
#98
iago-lito
closed
7 months ago
11
Last = 1000 too high
#97
Thomalpas
closed
1 year ago
6
(Hopefully) improving the english
#96
Thomalpas
closed
1 year ago
4
Module-level documentation and 'Quick start' section.
#95
ismael-lajaaiti
closed
1 year ago
6
Document `boost` options.
#94
iago-lito
closed
1 year ago
1
Write module-level documentation
#93
ismael-lajaaiti
closed
1 year ago
0
Construct interesting simulation scenarii for `boost` testing.
#92
iago-lito
opened
1 year ago
0
Welcome and quick start page
#91
ismael-lajaaiti
closed
1 year ago
0
Add use cases to the documentation
#90
ismael-lajaaiti
closed
7 months ago
4
GitHub test now on Julia v1.7 and v1.8
#89
ismael-lajaaiti
closed
7 months ago
2
GitHub test now on Julia v1.7 and v1.8
#88
ismael-lajaaiti
closed
1 year ago
1
Simulation output utils
#87
alaindanet
closed
1 year ago
12
Set death rate to 0 by default.
#86
ismael-lajaaiti
closed
1 year ago
1
Set default mortality rate to 0 & add basic pipeline to the tests.
#85
ismael-lajaaiti
closed
1 year ago
1
`ModelParameters` needs proper encapsulation.
#84
iago-lito
closed
7 months ago
5
Check for loops & disconnected species.
#83
ismael-lajaaiti
closed
1 year ago
4
Edges between species actually carry *data*.
#82
iago-lito
opened
1 year ago
1
Change the temperature dependence timescale and corresponding tolerance 🐌
#81
Thomalpas
opened
1 year ago
4
Suggestion: remove extinct species from the simulation and restart `solve()` on every extinction.
#80
iago-lito
opened
1 year ago
0
Refactor `functioning.jl`.
#79
ismael-lajaaiti
closed
1 year ago
15
Zombies the end: managing species extinction.
#78
ismael-lajaaiti
closed
1 year ago
1
Suggestion: replace `Matrix{Bool}` values with actual directed graphs from `Graphs.jl`.
#77
iago-lito
closed
7 months ago
3
Detect loops and disconnected species & improve structural models.
#76
ismael-lajaaiti
closed
1 year ago
2
Create `FoodWeb` from an adjacency list.
#75
ismael-lajaaiti
closed
1 year ago
5
Refactor storage of default allometric parameter values.
#74
ismael-lajaaiti
closed
7 months ago
3
Improve `ModelParameters` ergonomics with functors and Julia's pipe operator `|>`
#73
iago-lito
closed
7 months ago
3
Add mortality in dynamical equations and change default parameter values.
#72
ismael-lajaaiti
closed
1 year ago
4
define a Params abstract type for ModelParameters
#71
alaindanet
closed
1 year ago
2
Make the package more modular: Definition of a Params abstract type
#70
alaindanet
closed
1 year ago
1
Pre-defined parametrization of the model
#69
ismael-lajaaiti
opened
2 years ago
9
Temperature dependence v2
#68
hanamayall
closed
1 year ago
4
Tests fail with update of `DifferentialEquations`
#67
ismael-lajaaiti
closed
2 years ago
3
Producer competition
#66
alaindanet
closed
1 year ago
7
Zombies!
#65
Thomalpas
closed
1 year ago
6
Add contributing guidelines
#64
alaindanet
closed
1 year ago
5
Contribution guideline
#63
alaindanet
closed
2 years ago
0
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