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Beckschen / 3D-TransUNet

This is the official repository for the paper "3D TransUNet: Advancing Medical Image Segmentation through Vision Transformers"
Apache License 2.0
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How do you generate this file nnUNetPlansv2.1_plans_3D.pkl? #7

Open ljestaciocerquin opened 10 months ago

ljestaciocerquin commented 10 months ago

I installed all the packages and tried to run the code. However, I have an error when the code calls to default_configuration.py. I processed the data using the nnUNet guide. In this step, nnUNet usually processes the data and the output consists of several folders such as nnUNetPlans_2d or nnUNetPlans_3d_fullres and inside these folders, we can find many files with .pkl. Did you use another way of processing the data?

Beckschen commented 10 months ago

Thanks for your interest!

Actually nnUNet will also generate a plan file nnUNetPlansv2.1_plans_3D.pkl, which define the architecture configuration. This plan file will have much different if you process your own dataset.

Please let me know if you have more question and I am happy to help!

Best Jieneng