Refine Snakemake workflow with FastQC and MultiQC

BeeCSI-Microbiome / taxonomic_profiling_pipeline

0 stars 1 forks source link

Closed ropolomx closed 2 years ago

ropolomx commented 2 years ago

Include modules for visualization of FastQC and MultiQC.

LLansing commented 2 years ago

I have the rules written, but I'm having trouble testing on biocluster due to the bowtie2 step failing on some samples.

LLansing commented 2 years ago

Rules seem to be working, now I'm just performing some finishing touches and then will push the dev branch.

LLansing commented 2 years ago

Fastqc and multiqc have been implemented and merged to main branch.