Document Snakemake worfklow usage

BeeCSI-Microbiome / taxonomic_profiling_pipeline

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Document Snakemake worfklow usage #2

Closed ropolomx closed 2 years ago

ropolomx commented 2 years ago

This task mainly requires to transfer what has been shared in Slack and adding it to the GitHub repository in a way that it is easy to understand.

LLansing commented 2 years ago

Johnathan and I have included workflow usage instructions, requirement descriptions (conda, snakemake), and biocluster Conda installation instructions. I believe this issue is completed, pending approval, but additional minor edits will be required when/if Fastqc, Multiqc and Krona components are included in the workflow.

LLansing commented 2 years ago

Fastqc/Multiqc update has been made to the README

ropolomx commented 2 years ago

Looks great! Thanks for the good work @LLansing and @jonathho !