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BenKaehler / q2-makarsa

A QIIME 2 plugin to generate and visualise microbial networks.
BSD 3-Clause "New" or "Revised" License
8 stars 4 forks source link

Enable pulsar batch mode #18

Open BenKaehler opened 2 years ago

BenKaehler commented 2 years ago

This is a note that I've taken the config file pulsar parameter out of the inputs, because it breaks qiime2 provenance tracking.

Could be added in future, but would need extra work. Perhaps a new config file semantic type would be needed, if it doesn't already exist.

BenKaehler commented 2 years ago

job.res is also too hard. Let me know if you need it.

BenKaehler commented 2 years ago

Actually, I'm not going to add the whole pulsar.select "batch" option unless someone asks for it.

zdk123 commented 1 year ago

Hi there - the config files shipped with the package are really for illustration. The real magic is happening via batchjobs and there are too many compute cluster configurations to support so it's really up to the user/hpc admin to figure this out.