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BenLangmead / bowtie

An ultrafast memory-efficient short read aligner
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Renaming the v1.2.3 src archive to "bowtie-1.2.3-src.zip"? #101

Closed junaruga closed 2 years ago

junaruga commented 4 years ago

Hello, I have a suggestion.

There is "bowtie-src-x86_64.zip" in https://sourceforge.net/projects/bowtie-bio/files/bowtie/1.2.3/ .

Is it possible to rename the "bowtie-src-x86_64.zip" to "bowtie-1.2.3-src.zip" file name like other version's source files? I think the name "src-x86_64" is not correct. The source itself does not depend on the CPU architecture such as "x86_64".

The URL has been used to download the archive in bowtie RPM package's recipe file.

Following commands are succeeded.

$ wget http://downloads.sourceforge.net/bowtie-bio/bowtie-1.0.1-src.zip
$ wget http://downloads.sourceforge.net/bowtie-bio/bowtie-1.2.2-src.zip

But following command is failed.

$ wget http://downloads.sourceforge.net/bowtie-bio/bowtie-1.2.3-src.zip
--2020-01-05 13:36:11--  http://downloads.sourceforge.net/bowtie-bio/bowtie-1.2.3-src.zip
Resolving downloads.sourceforge.net (downloads.sourceforge.net)... 216.105.38.13
Connecting to downloads.sourceforge.net (downloads.sourceforge.net)|216.105.38.13|:80... connected.
HTTP request sent, awaiting response... 404 Not Found
2020-01-05 13:36:12 ERROR 404: Not Foun

Thank you.

mschilli87 commented 4 years ago

I'd suggest linking over renaming in case anyone already depends on the old name.

junaruga commented 4 years ago

I agree with the suggestion.

ch4rr0 commented 4 years ago

The x86_64 should not have been in the file name. That was a mistake on my part.

junaruga commented 3 years ago

While the bowtie-1.2.3 archive is still not renamed, bowtie-1.3.0 archive name is bowtie-$version-src.zip. Thank you for that.

$ wget http://downloads.sourceforge.net/bowtie-bio/bowtie-1.3.0-src.zip
...
2020-07-26 10:39:43 (386 KB/s) - ‘bowtie-1.3.0-src.zip’ saved [7469740/7469740]

A difference for the bowtie 1.3.0 archive comparing from previous archives is that bowtie-1.2.2-src.zip's top directory is bowtie-1.2.2 (bowtie-$version). bowtie-1.3.0-src.zip is top directory is bowtie-1.3.0-src (bowtie-$version-src).

bowtie-1.2.2 directory is created by the following command.

$ unzip bowtie-1.2.2-src.zip

bowtie-1.3.0-src directory is created by the following command.

$ unzip bowtie-1.3.0-src.zip