BenLangmead / bowtie

An ultrafast memory-efficient short read aligner
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bowtie-align-l-debug fail #108

Closed bensonlew closed 4 years ago

bensonlew commented 4 years ago

bowtie-align-l-debug assert_gt: expected (385067712) > (3120023328) bitset.h:27 bowtie: bitset.h:27: uint32_t bitsetRealloc(uint32_t&, uint32_t, const char*): Assertion `0' failed. Aborted

the genome size 14547261565, is it too large? chr1A 594102056 7 60 61 chr1B 689851870 604003771 60 61 chr1D 495453186 1305353180 60 61 chr2A 780798557 1809063927 60 61 chr2B 801256715 2602875801 60 61 chr2D 651852609 3417486802 60 61 chr3A 750843639 4080203629 60 61 chr3B 830829764 4843561336 60 61 chr3D 615552423 5688238270 60 61 chr4A 744588157 6314049908 60 61 chr4B 673617499 7071047875 60 61 chr4D 509857067 7755892340 60 61 chr5A 709773743 8274247032 60 61 chr5B 713149757 8995850345 60 61 chr5D 566080677 9720885939 60 61 chr6A 618079260 10296401301 60 61 chr6B 720988478 10924781889 60 61 chr6D 473592718 11657786849 60 61 chr7A 736706236 12139272786 60 61 chr7B 750620385 12888257467 60 61 chr7D 638686055 13651388199 60 61 chrUn 480980714 14300719029 60 61