Open BenLangmead opened 4 years ago
The Bowtie manual page seems to have some special characters, probably related to the quote characters: http://bowtie-bio.sourceforge.net/manual.shtml#paired-end-alignment.
As one example, see: "Paired-end alignments where one mate’s alignment is entirely contained within the other’s are considered invalid."
The Bowtie manual page seems to have some special characters, probably related to the quote characters: http://bowtie-bio.sourceforge.net/manual.shtml#paired-end-alignment.
As one example, see: "Paired-end alignments where one mate’s alignment is entirely contained within the other’s are considered invalid."