I am having to one-by-one look up stuff like AS, XN, XM, etc. Again, note that I am a total beginner here.
Request
It would be cool to create a command bowtie2-explain that one could pass this file to, and have it explain the meaning of everything. For example, print a brief summary of what MD:Z:16C6 or AS:i:-6 means.
Background
I am new to the world of bioinformatics, and am trying to interpret the output of
bowtie2-align
:I am using Sequence Alignment/Map Format Specification v1.
I am having to one-by-one look up stuff like
AS
,XN
,XM
, etc. Again, note that I am a total beginner here.Request
It would be cool to create a command
bowtie2-explain
that one could pass this file to, and have it explain the meaning of everything. For example, print a brief summary of whatMD:Z:16C6
orAS:i:-6
means.Thank you for your consideration!