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BenLangmead / bowtie2

A fast and sensitive gapped read aligner
GNU General Public License v3.0
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"library not loaded error message in running test of bowtie2-build of bowtie2-2.5.1-macos-x86_64 #440

Open Rfriedmancolumbia opened 12 months ago

Rfriedmancolumbia commented 12 months ago

Dear Bowtie2 Maintainer,

I just installed bowtie2-build of bowtie2-2.5.1-macos-x86_64 from the binary on a mac running Mac os12.6. I ran the script to test the bowtie2-build command and got the following error message:

base) icrc8cc-n004:testingbowtie raf4$ $BT2_HOME/bowtie2-build $BT2_HOME/example/reference/lambda_virus.fa lambda_virus
dyld[11207]: Library not loaded: '/usr/local/opt/zstd/lib/libzstd.1.dylib'
  Referenced from: '/Applications/bowtie/bowtie2-2.5.1-macos-x86_64/bowtie2-build-s'
  Reason: tried: '/usr/local/opt/zstd/lib/libzstd.1.dylib' (no such file), '/usr/local/lib/libzstd.1.dylib' (no such file), '/usr/lib/libzstd.1.dylib' (no such file)

Please advise. Thank you, Richard Friedman, Columbia University Cancer Center

ch4rr0 commented 11 months ago

Hello,

It appears that there was an issue in the build environment during the compilation of the x86-64 MacOS binaries. The attached packaged should contain the binaries with statically-linked libraries.

bowtie2-2.5.1-macos-x86_64.zip

Rfriedmancolumbia commented 11 months ago

Ben,

It worked.

Thank you very much.

Best wishes, Rich

From: ch4rr0 @.> Sent: Tuesday, July 18, 2023 8:07 AM To: BenLangmead/bowtie2 @.> Cc: Friedman, Richard A. @.>; Author @.> Subject: [EXTERNAL] Re: [BenLangmead/bowtie2] "library not loaded error message in running test of bowtie2-build of bowtie2-2.5.1-macos-x86_64 (Issue #440)

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Hello,

It appears that there was an issue in the build environment during the compilation of the x86-64 MacOS binaries. The attached packaged should contain the binaries with statically-linked libraries.

bowtie2-2.5.1-macos-x86_64.ziphttps://github.com/BenLangmead/bowtie2/files/12080208/bowtie2-2.5.1-macos-x86_64.zip

— Reply to this email directly, view it on GitHubhttps://github.com/BenLangmead/bowtie2/issues/440#issuecomment-1640090358, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AHT5YES5IAYXADZ7TJG5KHLXQZ373ANCNFSM6AAAAAAZ7RZTWE. You are receiving this because you authored the thread.Message ID: @.***>