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Benchmarking-Initiative / Benchmark-Models-PEtab

A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
BSD 3-Clause "New" or "Revised" License
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Add Jafarnejad et al. #11

Open LeonardSchmiester opened 5 years ago

LeonardSchmiester commented 5 years ago

Add model from https://www.nature.com/articles/s41540-019-0107-2

MerktSimon commented 5 years ago

Although availability of data and model is claimed, it does not appear in the supplementary section. I will write them an email.

LeonardSchmiester commented 5 years ago

Did you get data and model by now @MerktSimon?

MerktSimon commented 5 years ago

Model yes, data not yet. There might be the option to collect it ourselves, though. Because all data used seems to be published before by several labs.

elbaraim commented 5 years ago

I thought the plan was also to ask the authors ? How is the status on this ?

MerktSimon commented 5 years ago

They provided the SBML model. But not yet the data. I can ask again, in case the second email was lost.

MerktSimon commented 4 years ago

So the data is available through other publications. I will do LeonardSchmiester/Benchmark-Models-PEtab#10 first, since this is the main source for the used data.

elbaraim commented 3 years ago

@MerktSimon what is the status on this model?

MerktSimon commented 3 years ago

currently on hold for time reasons. If anyone else wants to go for it, please do so.