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Benchmarking-Initiative / Benchmark-Models-PEtab

A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
BSD 3-Clause "New" or "Revised" License
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citation/reference to original models #128

Closed anandijain closed 3 years ago

anandijain commented 3 years ago

in the pursuit of reproducibility, it would be great to have some information about each model (like citation and link to original SBML model)

currently there does not seem to be a way to find out where a given model came from.

thanks

paulflang commented 3 years ago

+1. I think a BioModels download url would be good (although I assume you had to make some modifications for PEtab compatibility).

dweindl commented 3 years ago

Hi @anandijain, the DOI of the original publication should already be included in the SBML annotations, for example: https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/blob/c9bfb921b4363ac41c6cc53c068bd6f7088e1a69/Benchmark-Models/Alkan_SciSignal2018/model_Alkan_SciSignal2018.xml#L30