search

Benchmarking-Initiative / Benchmark-Models-PEtab

A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
BSD 3-Clause "New" or "Revised" License
28 stars 16 forks source link

Additional Model: Jignesh H. Parmar & Pedro Mendes, PLoS CB, 2019 #15

Open JanHasenauer opened 5 years ago

JanHasenauer commented 5 years ago

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006680

The model is also available in BioModels

elbaraim commented 5 years ago

model is done

LeonardSchmiester commented 5 years ago

No std def for pOut. Need to do error propagation to calculate it.

dweindl commented 5 years ago 
Model parameter 'kNTBI_Fe1Tf' is target of AssignmentRule, and thus, must not be present in condition table or in parameter table.
JanHasenauer commented 4 years ago

@elbaraim @LeonardSchmiester do you need help here with the error propagation? Would be good to complete.

LeonardSchmiester commented 4 years ago

Might be good. It's quit some time ago since we worked on this. Will have to get into the model again.

JanHasenauer commented 4 years ago

Let's have a brief TC in the next days to discuss the error propagation