Benchmarking-Initiative / Benchmark-Models-PEtab

A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
BSD 3-Clause "New" or "Revised" License
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why is Laske called Laske? #171

Closed FFroehlich closed 1 year ago

FFroehlich commented 1 year ago

According to model metadata it was adapted from https://www.ebi.ac.uk/biomodels/MODEL1307270000, i.e., https://pubmed.ncbi.nlm.nih.gov/22593159/

I can't find any 2019 publication by Laske in PLoS Comp Bio

C-Peiter commented 1 year ago

It's called Laske, because it was related to issue #83. Yes, the model was adapted from Heldt et al. and there's also an issue for that (#76).

FFroehlich commented 1 year ago

Okay thanks, makes sense, but then the respective references in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/blob/master/README.md are wrong. Would also be nice to include a bit more provenance information in these benchmarks.

dilpath commented 1 year ago

Closed in #173 and #189