Benchmarking-Initiative / Benchmark-Models-PEtab

A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
BSD 3-Clause "New" or "Revised" License
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Zheng_PNAS2012: measurements matches simulation #181

Open dilpath opened 1 year ago

dilpath commented 1 year ago

Reported by @plakrisenko

The measurements and simulation are almost identical.

Comparing the data [1] and simulation [2] from the original benchmark collection.

[1] https://github.com/Benchmarking-Initiative/Benchmark-Models/blob/master/Benchmark-Models/Zheng_PNAS2012/Data/model1_data1.xlsx [2] https://github.com/Benchmarking-Initiative/Benchmark-Models/blob/master/Benchmark-Models/Zheng_PNAS2012/SimulatedData/model1_data1.xlsx

plakrisenko commented 1 year ago

Zheng_PNAS2012_simulated_w_nominal_values.csv Also, [2] is different from what I get when simulating with nominal values from parameter table