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Benchmarking-Initiative / Benchmark-Models-PEtab

A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
BSD 3-Clause "New" or "Revised" License
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Blasi_CellSystems2016 is not valid SBML #211

Closed matthiaskoenig closed 3 months ago

matthiaskoenig commented 3 months ago 

Blasi_CellSystems2016
ERROR    ENone: General SBML conformance (core, L4, code)                                                                                                                             validation.py:188
         [Error] Document does not conform to the SBML XML schema                                                                                                                                      
         An SBML XML document must conform to the XML Schema for the corresponding SBML Level, Version and Release. The XML Schema for SBML defines the basic SBML object structure,                   
         the data types used by those objects, and the order in which the objects may appear in an SBML document.                                                                                      
         Reference: L2V4 Section 4.1                                                                                                                                                                   
          Only one <annotation> element is permitted inside a particular containing element.                                                                                                           

ERROR    `read_sbml` error '/home/mkoenig/git/Benchmark-Models-PEtab/Benchmark-Models/Blasi_CellSystems2016/model_Blasi_CellSystems2016_allCombinations.xml': SBMLDocumentErrors encountered sbml.py:66
         while reading the SBML file. 
``