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Benchmarking-Initiative / Benchmark-Models-PEtab

A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
BSD 3-Clause "New" or "Revised" License
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Lang_PLOSComputBiol2024 is not valid SBML #212

Closed matthiaskoenig closed 3 months ago

matthiaskoenig commented 3 months ago 
Isensee_JCB2018
ERROR    ENone: General SBML conformance (core, L3, code)                                                                                                                                                      validation.py:188
         [Error] Only one Annotation object is permitted under a given SBML object                                                                                                                                              
         A given SBML object may contain at most one <annotation> element.                                                                                                                                                      
         Reference: L3V1 Section 3.2                                                                                                                                                                                            
          The SBML <model> element has multiple <annotation> children.                                                                                                                                                          

ERROR    `read_sbml` error '/home/mkoenig/git/Benchmark-Models-PEtab/Benchmark-Models/Lang_PLOSComputBiol2024/model_Lang_PLOSComputBiol2024.xml': SBMLDocumentErrors encountered while reading the SBML file.