I have installed vdsearch. However, I faced this issue while running $ "vdsearch --help".
Error:
Traceback (most recent call last):
File "/home/chong/miniconda3/bin/vdsearch", line 33, in <module>
sys.exit(load_entry_point('vdsearch==0.0.1', 'console_scripts', 'vdsearch')())
File "/home/chong/miniconda3/bin/vdsearch", line 25, in importlib_load_entry_point
return next(matches).load()
File "/home/chong/miniconda3/lib/python3.8/importlib/metadata.py", line 77, in load
module = import_module(match.group('module'))
File "/home/chong/miniconda3/lib/python3.8/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 843, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "/home/chong/miniconda3/lib/python3.8/site-packages/vdsearch-0.0.1-py3.8-linux-x86_64.egg/vdsearch/main.py", line 8, in <module>
from . import commands
File "/home/chong/miniconda3/lib/python3.8/site-packages/vdsearch-0.0.1-py3.8-linux-x86_64.egg/vdsearch/commands/__init__.py", line 1, in <module>
from .canonicalize import canonicalize
File "/home/chong/miniconda3/lib/python3.8/site-packages/vdsearch-0.0.1-py3.8-linux-x86_64.egg/vdsearch/commands/canonicalize.py", line 9, in <module>
from vdsearch.nim import canonicalize as rotcanon
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 971, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 914, in _find_spec
File "/home/chong/miniconda3/lib/python3.8/site-packages/nimporter.py", line 1269, in find_spec
return Nimporter.import_nim_code(fullname, path, library=False)
File "/home/chong/miniconda3/lib/python3.8/site-packages/nimporter.py", line 944, in import_nim_code
NimCompiler.compile_nim_code(
File "/home/chong/miniconda3/lib/python3.8/site-packages/nimporter.py", line 705, in compile_nim_code
cls.check_compile_errors(errors, library, nim_args, output, tmp_cwd, warnings)
File "/home/chong/miniconda3/lib/python3.8/site-packages/nimporter.py", line 492, in check_compile_errors
raise NimCompileException(errors[0])
nimporter.NimCompileException: cannot open file: cello
| import bioseq
-> import cello
| import strutils
|
At /home/chong/chris/fungi_RNA/revised_genome_plot/mmseqs_clustering/vdsearch/vdsearch/nim/canonicalize.nim 5:8
Dear developer,
I have installed vdsearch. However, I faced this issue while running $ "vdsearch --help".
Error:
Any suggestion to solve this issue?
Best regards, Chong