BenoitMorel / ParGenes

A massively parallel tool for model selection and tree inference on thousands of genes
GNU General Public License v3.0
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Missing concatenated bootstraps files when running with a lot of cores #27

Closed BenoitMorel closed 6 years ago

BenoitMorel commented 6 years ago

With the 1024 cores muscle run, all the boostraps files are well generated, but after the concatenation step, a lot are missing.

It might be because of this weird line in mr_bootstraps.py: 60 with concurrent.futures.ThreadPoolExecutor(max_workers = int(cores)) as e: To many threads are started, but this can run only on one single node...