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Benson-Genomics-Lab / TRF

Tandem Repeats Finder: a program to analyze DNA sequences
https://tandem.bu.edu/trf/trf.html
GNU Affero General Public License v3.0
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TRF results file is malformed when input filename is long and more than 120 repeats are found in a batch #3

Open FredericBGA opened 3 years ago

FredericBGA commented 3 years ago

hi,

I've reporter this at first in RepeatMasker git repo: https://github.com/rmhubley/RepeatMasker/issues/109

@jebrosen helped me to figure it out, and this behavior seems to be due to this line: https://github.com/Benson-Genomics-Lab/TRF/blob/355c1f92b24f6b2e71650eda3549d46f0316e571/src/trfclean.h#L569

Is it possible to change this? Because sometimes it's hard to control the length of filenames.

thank you.