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BenthicSubstrateMapping / PyHum

Python code to read, display, export and analyse Humminbird sidescan sonar data
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Error in python -c"import PyHum;PyHum.dotest()" #75

Closed bibinwils closed 2 years ago

bibinwils commented 2 years ago

I'm working in Ubuntu 16.04. I seamlessly installed the PyHum. But when I give the command 'python -c"import PyHum;PyHum.dotest()" ' it showing the following error.

` (pyhum) bibin@emlab:~$ python -c"import PyHum;PyHum.dotest()" Directory not copied. Error: [Errno 17] File exists: '/home/bibin/pyhum_test' Input file is /home/bibin/pyhum_test/test.DAT Son files are in /home/bibin/pyhum_test cs2cs arguments are epsg:26949 Draft: 0.3 Celerity of sound: 1450.0 m/s Port and starboard will be flipped Transducer length is 0.108 m Bed picking is auto Only 1 chunk will be produced Data is from the 998 series Bearing will be calculated from coordinates Bearing will be filtered Checking the epsg code you have chosen for compatibility with Basemap ... ... epsg code compatible WARNING: Because files have to be read in byte by byte, this could take a very long time ... Processing took 13.0088269711seconds to analyse Done!

Input file is /home/bibin/pyhum_test/test.DAT Sonar file path is /home/bibin/pyhum_test Max. transducer power is 1000.0 W pH is 7.0 Temperature is 10.0 Traceback (most recent call last): File "", line 1, in File "/home/bibin/anaconda3/envs/pyhum/lib/python2.7/site-packages/PyHum/test.py", line 138, in dotest PyHum.correct(humfile, sonpath, maxW, doplot, dofilt, correct_withwater, ph, temp, salinity, dconcfile) File "/home/bibin/anaconda3/envs/pyhum/lib/python2.7/site-packages/PyHum/_pyhum_correct.py", line 314, in correct Zt, R, A = remove_water(star_fp, bed, shape_star, dep_m, pix_m, 1, maxW) File "/home/bibin/anaconda3/envs/pyhum/lib/python2.7/site-packages/PyHum/_pyhum_correct.py", line 705, in remove_water a[:,k] = d[k]/yvec ValueError: could not broadcast input array from shape (1479,1) into shape (1479) (pyhum) bibin@emlab:~$ `

May I know how to resolve this?

dbuscombe-usgs commented 2 years ago

This is now legacy code, written in python 2.7 and not actively worked on or supported

bibinwils commented 2 years ago

May I know if there are any other packages or codes available to extract data from Humminbird helix 5. I'm a Ph.D. student. I developed an autonomous surface vehicle with that sensor and surveyed an entire lake. To go for publication, I need to show a detailed analysis of that data.