How to modify the target module number for K1？

BergmannLab / MONET

MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236

GNU General Public License v3.0

42 stars 15 forks source link

How to modify the target module number for K1？ #21

Closed FenghuJi closed 4 years ago

FenghuJi commented 4 years ago

I have ran monet with my network file in method K1. It seems 100 modules are predicted with K1. Also the benchmark network also outputed 100 modules. How can I get 50 or 20 modules for my network with K1?

mattiat commented 4 years ago

Hi FenghuJi , I noticed you opened an issue and then closed it. Are things working for you?

FenghuJi commented 4 years ago

Hi Mattiat, Yeah, I notice that I can modify the code in 'run_tusk.sh' of K1 to change target cluster number. Also, the README also provides a parameter 'nclusters' for users now. It is very kind of you. It works now. Thanks very much!