BergmannLab / MONET

MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236
GNU General Public License v3.0
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Hard-coded file paths #57

Open FelixTheStudent opened 1 year ago

FelixTheStudent commented 1 year ago

Hi MONET-team,

love the tool and the work everyone put in.

One issue I have is that MONET writes temporary files to its installation directory. This means that on a UNIX cluster, I can't run two jobs in parallel without them overwriting each other and giving an error around a Stale file handle. Also, I can not offer a write-protected version to all HPC cluster users.

Would you be willing to fix this? I believe the following files are written upon every MONET run, but there might be others:

Best,

Felix