di-mendes
commented
4 months ago Hey,
I never found the solution no.
On Wed, 29 May 2024 at 12:06, TBar123 @.***> wrote:
I am also having this problem- did you find a solution?
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When I try to run R1 I get this error. Does anyone know what could be happening?
Code: R1: Running Team Causality's code from the DREAM challenge on disease module identification [1] "/R1_code/sub-challenge1"
Attaching package: 'igraph'
The following objects are masked from 'package:stats':
The following object is masked from 'package:base':
[1] "Read input finished!" [1] "Clustering start!" expected no. of edges:1416619, xadj[nvtxs]:1337981 Input graph information --------------------------------------------------- Name: test.txt, #Vertices: 21879, #Edges: 668990 Output shall be placed in the file output.txt
Clustering.... Coarsened 20 levels Number of vertices in coarsest graph:798 Done level 20 Done level 19 Done level 18 Done level 17 Done level 16 Done level 15 Done level 14 Done level 13 Done level 12 Done level 11 Done level 10 Done level 9 Done level 8 Done level 7 Done level 6 Done level 5 Done level 4 Done level 3 Done level 2 Done level 1 Done level 0
Clusters: 16 N-Cut: 10.108 AvgN-Cut: 0.632 Balance in cluster sizes: 2.24 Std.Deviation in cluster sizes: 741.13 Coefficient_of_Variation: 0.54
Output is written to file: output.txt
Timing Information -------------------------------------------------- I/O: 0.030 Partitioning: 2.814 (MLR-MCL time) Total: 2.849
[1] 14 Error in output[[i]] : subscript out of bounds Calls: main Execution halted