Closed fellen88 closed 4 years ago
visatish
commented
4 years ago Hi @fellenB,
This seems to be an issue with rtree. Can you try uninstalling/reinstalling rtree alone and make sure import rtree works?
Another possibility is to try a different Python version if possible. This shouldn't really matter, but it's worth a try.
You could also try building the provided Dockerfiles instead as instructed here.
The CI builds do seem to be passing, even for Python3.5.
Thanks, Vishal
fellen88
commented
4 years ago thanks for your response! the rtree issue is corrected referring to https://github.com/Toblerity/rtree/issues/120. but the there is also something wrong with installation of meshrender.
pip install visualization --default-time=10000 Collecting visualization Using cached https://files.pythonhosted.org/packages/05/6e/3637994716570f6a727075eab2a346142775b44d919b2a0a1ecf6e0a0208/visualization-0.0.6.tar.gz Collecting imageio Using cached https://files.pythonhosted.org/packages/1a/de/f7f985018f462ceeffada7f6e609919fbcc934acd9301929cba14bc2c24a/imageio-2.6.1-py3-none-any.whl Requirement already satisfied: numpy in /home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages (from visualization) (1.18.0) Requirement already satisfied: matplotlib<=2.2.0 in /home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages (from visualization) (2.2.0) Collecting trimesh[easy] Using cached https://files.pythonhosted.org/packages/bd/10/4d4e0b06a94008953f0d6d73a94904761820075022082b8a72ff16e70763/trimesh-3.5.14.tar.gz Requirement already satisfied: autolab_core in /home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages (from visualization) (0.0.13) Requirement already satisfied: autolab_perception in /home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages (from visualization) (0.0.8) Collecting meshrender Using cached https://files.pythonhosted.org/packages/00/0a/3133ecb4b885b33d21531645dda39b2c62d9f0683582fe002adacaf2d257/meshrender-0.0.10.tar.gz ERROR: Command errored out with exit status 1: command: /home/siasun/.virtualenvs/gqcnn_python3.5/bin/python3.5 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-wq2codk5/meshrender/setup.py'"'"'; file='"'"'/tmp/pip-install-wq2codk5/meshrender/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-install-wq2codk5/meshrender/pip-egg-info cwd: /tmp/pip-install-wq2codk5/meshrender/ Complete output (91 lines): WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.VerifiedHTTPSConnection object at 0x7fb2fcc17908>: Failed to establish a new connection: [Errno 101] Network is unreachable',)': /packages/a5/fa/5bd627f889327999736350637d7e759a17486d32b69be0c703f7abc64e4e/msgpack-0.6.2-cp35-cp35m-manylinux1_x86_64.whl ERROR: Exception: Traceback (most recent call last): File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_vendor/urllib3/response.py", line 425, in _error_catcher yield File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_vendor/urllib3/response.py", line 507, in read data = self._fp.read(amt) if not fp_closed else b"" File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_vendor/cachecontrol/filewrapper.py", line 62, in read data = self.__fp.read(amt) File "/usr/lib/python3.5/http/client.py", line 458, in read n = self.readinto(b) File "/usr/lib/python3.5/http/client.py", line 498, in readinto n = self.fp.readinto(b) File "/usr/lib/python3.5/socket.py", line 575, in readinto return self._sock.recv_into(b) File "/usr/lib/python3.5/ssl.py", line 929, in recv_into return self.read(nbytes, buffer) File "/usr/lib/python3.5/ssl.py", line 791, in read return self._sslobj.read(len, buffer) File "/usr/lib/python3.5/ssl.py", line 575, in read v = self._sslobj.read(len, buffer) socket.timeout: The read operation timed out
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_internal/cli/base_command.py", line 153, in _main
status = self.run(options, args)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_internal/commands/wheel.py", line 158, in run
resolver.resolve(requirement_set)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_internal/legacy_resolve.py", line 201, in resolve
self._resolve_one(requirement_set, req)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_internal/legacy_resolve.py", line 365, in _resolve_one
abstract_dist = self._get_abstract_dist_for(req_to_install)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_internal/legacy_resolve.py", line 313, in _get_abstract_dist_for
req, self.session, self.finder, self.require_hashes
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_internal/operations/prepare.py", line 194, in prepare_linked_requirement
progress_bar=self.progress_bar
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_internal/download.py", line 465, in unpack_url
progress_bar=progress_bar
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_internal/download.py", line 316, in unpack_http_url
progress_bar)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_internal/download.py", line 551, in _download_http_url
_download_url(resp, link, content_file, hashes, progress_bar)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_internal/download.py", line 253, in _download_url
hashes.check_against_chunks(downloaded_chunks)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_internal/utils/hashes.py", line 80, in check_against_chunks
for chunk in chunks:
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_internal/download.py", line 223, in written_chunks
for chunk in chunks:
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_internal/download.py", line 212, in resp_read
decode_content=False):
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_vendor/urllib3/response.py", line 564, in stream
data = self.read(amt=amt, decode_content=decode_content)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_vendor/urllib3/response.py", line 529, in read
raise IncompleteRead(self._fp_bytes_read, self.length_remaining)
File "/usr/lib/python3.5/contextlib.py", line 77, in __exit__
self.gen.throw(type, value, traceback)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pip/_vendor/urllib3/response.py", line 430, in _error_catcher
raise ReadTimeoutError(self._pool, None, "Read timed out.")
pip._vendor.urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='files.pythonhosted.org', port=443): Read timed out.
Traceback (most recent call last):
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/setuptools/installer.py", line 128, in fetch_build_egg
subprocess.check_call(cmd)
File "/usr/lib/python3.5/subprocess.py", line 581, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/home/siasun/.virtualenvs/gqcnn_python3.5/bin/python3.5', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmptdtuptvz', '--quiet', 'msgpack']' returned non-zero exit status 2
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-wq2codk5/meshrender/setup.py", line 47, in <module>
'sphinx_rtd_theme'
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/setuptools/__init__.py", line 144, in setup
_install_setup_requires(attrs)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/setuptools/__init__.py", line 139, in _install_setup_requires
dist.fetch_build_eggs(dist.setup_requires)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/setuptools/dist.py", line 721, in fetch_build_eggs
replace_conflicting=True,
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pkg_resources/__init__.py", line 782, in resolve
replace_conflicting=replace_conflicting
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pkg_resources/__init__.py", line 1065, in best_match
return self.obtain(req, installer)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/pkg_resources/__init__.py", line 1077, in obtain
return installer(requirement)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/setuptools/dist.py", line 777, in fetch_build_egg
return fetch_build_egg(self, req)
File "/home/siasun/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages/setuptools/installer.py", line 130, in fetch_build_egg
raise DistutilsError(str(e))
distutils.errors.DistutilsError: Command '['/home/siasun/.virtualenvs/gqcnn_python3.5/bin/python3.5', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmptdtuptvz', '--quiet', 'msgpack']' returned non-zero exit status 2
----------------------------------------ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
visatish
commented
4 years ago Hmm, this seems to be a network issue preventing pip from fetching the remote package:
Failed to establish a new connection: [Errno 101] Network is unreachable
The previous packages are all being installed from locally cached versions. Can you check if you have a working network connection?
fellen88
commented
4 years ago That‘s right！The network is available to install other package such as rtree but is not available to install meshrender. I change network connection and it works. Thank you very much!
System information
Describe the problem visualization package depend on meshrender(version 0.0.10), there is something wrong with the installation of meshrender.
The installation log Collecting visualization Using cached https://files.pythonhosted.org/packages/05/6e/3637994716570f6a727075eab2a346142775b44d919b2a0a1ecf6e0a0208/visualization-0.0.6.tar.gz Collecting imageio Using cached https://files.pythonhosted.org/packages/1a/de/f7f985018f462ceeffada7f6e609919fbcc934acd9301929cba14bc2c24a/imageio-2.6.1-py3-none-any.whl Requirement already satisfied: numpy in /home/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages (from visualization) (1.18.0) Requirement already satisfied: matplotlib<=2.2.0 in /home/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages (from visualization) (2.2.0) Collecting trimesh[easy] Using cached https://files.pythonhosted.org/packages/8e/50/182e365ab5f3b715ebe5e11bad7386fd2a86a36de0c1067a4ea6ec906e1d/trimesh-3.5.13.tar.gz Requirement already satisfied: autolab_core in /home/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages (from visualization) (0.0.13) Requirement already satisfied: autolab_perception in /home/.virtualenvs/gqcnn_python3.5/lib/python3.5/site-packages (from visualization) (0.0.8) Collecting meshrender Using cached https://files.pythonhosted.org/packages/00/0a/3133ecb4b885b33d21531645dda39b2c62d9f0683582fe002adacaf2d257/meshrender-0.0.10.tar.gz ERROR: Command errored out with exit status 1: command: /home/.virtualenvs/gqcnn_python3.5/bin/python3.5 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-v5d595zn/meshrender/setup.py'"'"'; file='"'"'/tmp/pip-install-v5d595zn/meshrender/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-install-v5d595zn/meshrender/pip-egg-info cwd: /tmp/pip-install-v5d595zn/meshrender/ Complete output (51 lines): ERROR: Command errored out with exit status 1: command: /home/.virtualenvs/gqcnn_python3.5/bin/python3.5 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xpvy956a/rtree/setup.py'"'"'; file='"'"'/tmp/pip-wheel-xpvy956a/rtree/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-wheel-xpvy956a/rtree/pip-egg-info cwd: /tmp/pip-wheel-xpvy956a/rtree/ Complete output (15 lines): Traceback (most recent call last): File "", line 1, in
File "/tmp/pip-wheel-xpvy956a/rtree/setup.py", line 3, in
import rtree
File "/tmp/pip-wheel-xpvy956a/rtree/rtree/init.py", line 1, in
from .index import Rtree
File "/tmp/pip-wheel-xpvy956a/rtree/rtree/index.py", line 6, in
from . import core
File "/tmp/pip-wheel-xpvy956a/rtree/rtree/core.py", line 145, in
rt.Error_GetLastErrorNum.restype = ctypes.c_int
File "/usr/lib/python3.5/ctypes/init.py", line 360, in getattr
func = self.getitem(name)
File "/usr/lib/python3.5/ctypes/init.py", line 365, in getitem
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: /home/.virtualenvs/gqcnn_python3.5/bin/python3.5: undefined symbol: Error_GetLastErrorNum
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.