Intervention added to base class

[josephdviviano]

Hi Paul! I'm splitting this PR (with one big commit, oops) from the next PR with the demo notebooks which I will push next.

What I did:

• Removed knockout edge method from interventions.py.
• Added knockout_edge and knockout_gene methods to the CellPopulation base class, along with associated helper methods.
• To knockout genes, we mask the state of the cell at all timesteps, this means all CellPopulations have a state_mask. I didn't optimize this potentially, it would be worth a check on your side.
• The state_mask also required some changes to NodeSet.

[josephdviviano]

Hey is work ongoing on this?

Joseph (Mobile)

On Mon, Oct 30, 2023 at 08:12 Paul Bertin @.***> wrote:

Closed #51 https://github.com/Bertinus/FLeCS/pull/51.

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