TopAnat on Condition graph

[fbastian]

In GitLab by @fbastian on Feb 20, 2016, 22:28

A test of TopAnat on a graph of Conditions, rather than a graph of anatomical structures, has been implemented in branch test_topanat_conditions_graph. This version is the one deployed at http://altbgee.unil.ch/?page=top_anat as of Feb. 20 2016.

• in this prototype, the stage selection has no effect.
• You should unselect one of the stage, otherwise the same analysis will be launched twice
• the server is likely to crash when performing more than one analysis at a time
• one analysis takes several hours

Conclusion: really cool, but really computer-intensive (at least, for topOBO...). We should rely on the fast implementation of enrichment tests with no decorrelation, or re-implement completely topOBO to make it fast with deorrelations.

[fbastian]

In GitLab by @marcrr on Jun 20, 2019, 08:56

moved to Roadmap suggestions

@fbastian I'm letting you close it