Add Bioschemas/Schema.org markup

[fbastian]

In GitLab by @vrechdelaval on Dec 17, 2018, 16:00

Schema.org wants to improve the web by creating a structured data markup schema supported by major search engines. On-page markup helps search engines understand the information on web pages and provide richer search results. Search engines want to make it easier for people to find relevant information on the web. Markup can also enable new tools and applications that make use of the structure.
Bioschemas aims to improve data interoperability in life sciences. It does this by encouraging people in life science to use schema.org markup, so that their websites and services contain consistently structured information. This structured information then makes it easier to discover, collate and analyse distributed data.

[fbastian]

In GitLab by @vrechdelaval on Dec 17, 2018, 16:02

I worked on that during BioHackathon, see branch bioschemas.
Now, we need to discuss about what is the best markup for Bgee.

[fbastian]

In GitLab by @vrechdelaval on Feb 18, 2019, 16:56

With @fbastian, we discussed on that issue during SIB bioschemas workshop.

Notes of SIB bioschemas workshop

• The aim of schema.org is to improve search engine results not to "understand" web pages content
• Each Dataset should have an ID, a name and description to be indexed
• Each Dataset should have an unique name and an unique description to be properly indexed
• One Dataset is seen when it is described into a DataCatalog

Draft of Schema.org types to use to decribe Bgee

• Bgee is one DataCatalog with a potentialAction (gene search).
• For gene expression calls, we have one Dataset per species (human calls, mouse calls, etc.)
• For processed expression values, we have one Dataset per species/datatype (human/rna-seq, human/affy, mouse/rna-seq, etc.)

[fbastian]

In GitLab by @vrechdelaval on Jul 10, 2019, 18:50

After new discussion with @fbastian, we decided:

• Bgee - Organisation (in a JSON-LD of the home page in a @graph )
• Bgee gene expression data - DataCatalog (in a JSON-LD of the home page in a @graph with sameAs for Datasets)
• TopAnat, Anat. homologies, Expr. comp. - WebApplications (in a JSON-LD of dedicated pages)
• Species pages - Datasets (in a JSON-LD of dedicated pages)
• R packages - SoftwareApplication (in a JSON-LD of dedicated pages)
• Source code page - SoftwareSourceCode (in a JSON-LD of dedicated page)
• Annotation and ontologies pages - CreativeWork (in a JSON-LD of dedicated page)
• Other pages - WebPage (with HTLM attributes of dedicated pages)
• FAQ - FAQPage; Question; Answer (with HTLM attributes of dedicated pages)
• About - AboutPage (with HTLM attributes of dedicated pages)

[fbastian]

In GitLab by @vrechdelaval on Jul 10, 2019, 18:50

closed

[fbastian]

In GitLab by @vrechdelaval on Jul 16, 2019, 10:45

File with some specs: https://docs.google.com/presentation/d/1tRlvkmz3ex1pA3Uy2AoYV_L9OiQeTnSkKgJTh9O_ybc/edit?usp=sharing Google recommandations: https://developers.google.com/search/docs/data-types/dataset