search

BhallaLab / moose-core

C++ basecode and python scripting interface
https://moose.ncbs.res.in
GNU General Public License v3.0
15 stars 27 forks source link

latest moose-core (commit number 0e85a5) compiled with python2.7 with gcc 4.9.2? #398

Closed hrani closed 4 years ago

hrani commented 4 years ago

export GSL_ROOT_DIR=/softwares/gsl-2.1/

moose-core/_build /softwares/cmake3.17/bin/cmake .. -DPYTHON_INCLUDE_DIR="/usr/include/python2.7/" -DPYTHON_LIBRARY="/usr/lib64/" -DPYTHON_EXECUTABLE="/usr/bin/python"

cMakereport.txt

CMakeCache.txt

I think it compiles with out any error, pythonpath is set

import moose [INFO] Plot utilities are not loaded due to 'Matplotlib requires pyparsing>=2.0.1; you have 1.5.6' moose.__path__ ['~/moose-core2/python/moose'] moose.loadModel('Anno_acc12.g','/test12','ee')

`moose.reinit()` `moose.start(10)` with 'ee' as solver its fine reinit works and runs **moose.mooseAddChemSolver("/test12","gsl")** File "~/moose-core2/python/moose/moose.py", line 264, in mooseAddChemSolver print( chemError_ ) UnboundLocalError: local variable 'chemError_' referenced before assignment **moose.loadModel('Anno_acc12.g','/acc12','gsl')** File "~/moose-core2/python/moose/moose.py", line 112, in loadModel chemError = _chemUtil.add_Delete_ChemicalSolver.mooseAddChemSolver(modelpath, method) NameError: global name '_chemUtil' is not defined `moose.le('/test12')` segfault
dilawar commented 4 years ago

This is related to #397 and caused by the import failure of matplotlib.

dilawar commented 4 years ago

There should be helpful message when import failed in such cases.

dilawar commented 4 years ago

Segfault even with 8d68b6d . Doen't matter which commit I use, I get seg-fault with default python2/3 compiled with gcc.4.8.5 .