BhallaLab / moose-examples

Example scripts, demo and tutorials
https://moose.ncbs.res.in
GNU General Public License v2.0
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This repository requires cleanup #43

Open dilawar opened 6 years ago

dilawar commented 6 years ago

Currently moose-examples is >30MB is size! It would require to rewriting history after cleanup otherwise we wont be able to reduce the size. Rewriting history means that all forks of moose-examples will become invalid. Many of these files are not required and added inadvertently.

Three largest directories:

13M snippets 6.6M paper-2015 5.2M neuroml

Directories with more than 1MB of content:

2 neuroml/PurkinjeCellPassivePulseInput 2 neuroml/PurkinjeCellPassivePulseInput/cells 2 paper-2015/Fig2_elecModels 2 paper-2015/Fig5_CellMultiscale 2 paper-2015/Fig5_CellMultiscale/cells 2 tutorials/Rdesigneur/cells 3 neuroml/CA1PyramidalCell 3 neuroml/CA1PyramidalCell/cells_channels 3 tutorials 3 tutorials/Rdesigneur 4 paper-2015/Fig6_NetMultiscale 4 paper-2015/Fig6_NetMultiscale/cells_channels 6 neuroml 7 paper-2015

Largest files:

9.6M ./snippets/symcompartment.txt 1.1M ./neuroml/PurkinjeCellPassivePulseInput/cells/purk2.morph.xml 936K ./snippets/threading_demo.dat 736K ./snippets/hdfdemo_Vm.csv 612K ./paper-2015/Fig6_NetMultiscale/cells_channels/CA1spiny7_0.morph.xml 608K ./paper-2015/Fig6_NetMultiscale/cells_channels/CA1spiny.morph.xml 592K ./tutorials/Rdesigneur/chans/CA1.morph.xml 592K ./paper-2015/Fig6_NetMultiscale/cells_channels/CA1.morph.xml 592K ./paper-2015/Fig6_NetMultiscale/cells_channels/CA1.morph.spines.xml 592K ./paper-2015/Fig5_CellMultiscale/chans/CA1.morph.xml 592K ./paper-2015/Fig2_elecModels/chans/CA1.morph.xml 592K ./neuroml/CA1PyramidalCell/cells_channels/CA1_original.morph.xml 592K ./neuroml/CA1PyramidalCell/cells_channels/CA1.morph.xml 592K ./neuroml/CA1PyramidalCell/cells_channels/CA1.morph.original.xml 592K ./neuroml/CA1PyramidalCell/cells_channels/CA1inhomog.morph.xml 588K ./tutorials/Rdesigneur/cells/CA1.morph.xml 588K ./paper-2015/Fig6_NetMultiscale/cells_channels/CA1_nochans.morph.xml 588K ./paper-2015/Fig5_CellMultiscale/cells/CA1.morph.xml 588K ./paper-2015/Fig2elecModels/cells/CA1.morph.xml 588K ./neuroml/CA1PyramidalCell/cells 308K ./genesis/EGFR_MAPK_58.png 252K ./tutorials/Rdesigneur/cells/DHC-neuron.CNG.swc 252K ./paper-2015/Fig5_CellMultiscale/cells/DHC-neuron.CNG.swc 228K ./neuroml/OlfactoryBulbPassive/OBpassive_numgloms3_seed750.0.xml 228K ./.git/objects/pack/pack-9273cc4dcd5076582996dcd1fb1126a024c42053.idx 196K ./snippets/compartmental_neuron.csv 156K ./tutorials/ChemicalBistables/mapkFB.png 152K ./genesis/acc68.png 148K ./neuroml/OlfactoryBulbPassive/cells/mitral.xml 144K ./snippets/output_hdfdemo.h5 136K ./.git/objects/pack/pack-3a08e23cec6c3fdb210083f48ef5b712d9de3287.pack 120K ./paper-2015/Fig4_ReacDiff/CaMKII_merged77.g 116K ./neuroml/OlfactoryBulbPassive/OBpassive_slice_numgloms2_seed100.0.xml 112K ./tutorials/Rdesigneur/cells/VHC-neuron.CNG.swc 112K ./paper-2015/Fig5_CellMultiscale/cells/VHC-neuron.CNG.swc 112K ./paper-2015/Fig2_elecModels/cells/VHC-neuron.CNG.swc 108K ./tutorials/ChemicalOscillators/turingPatternTut.png 96K ./tutorials/Rdesigneur/cells/970529c.CNG.swc 96K ./paper-2015/Fig5_CellMultiscale/cells/970529c.CNG.swc 88K ./.git/objects/53/b4aa1a161381171b0779b3686282666076eedd 84K ./hopfield/hopfield_ui.py 80K ./hopfield/hopfield_ui.ui 76K ./snippets/lifcomp.csv 76K ./genesis/acc35.g 72K ./tutorials/Rdesigneur/cells/barrionuevo_cell1zr.CNG.swc 72K ./snippets/barrionuevo_cell1zr.CNG.swc 68K ./.git/index 52K ./tutorials/ChemicalOscillators/relaxOsc_tut.png 48K ./genesis/Osc_cspace_ref_model.png 48K ./genesis/Kholodenko.png 44K ./squid/squid_demo_qt5.py 44K ./squid/squid_demo.py 44K ./snippets/nsdf_demo.h5