hrani
commented
3 years ago Hi, Since I am cleanup the documentation I was going through all the examples, with the latest build (I build from source) I am able to run the examples from rdesigneur and I am able to run ex2.0_currentPulse.py and also code which you have sent below is running without complaining of vclamp or current but result shown in the document are rising up to 1000nA and now its rising to 600nA and also example ex3.1_squid_vclamp.py the result are different, I am going through it and get back to you we have changed few base code need to see if that is affecting us. but could you let us know how did you install moose and which version of moose, based on that we can go through it why its complaining of vclamp.
Best HarshaRani
On Sat, Oct 10, 2020 at 12:19 AM ishanseth18 notifications@github.com wrote:
most recent documentation at https://moose.ncbs.res.in/readthedocs/user/py/rdesigneur/rdes.html#bare-rdesigneur-single-passive-compartment does not support example methods for redesigneur.
Through some of my own changes to the code given I was able to get expected results up to ex2.0_currentPulse.py, however past that point I am not able to get the results that are shown in the documentation. This is because fields "vclamp" and "current" are coming up as unknown.
Below is the code I am having trouble with.
import moose import rdesigneur as rd rdes = rd.rdesigneur( stimList = [['soma', '1', '.', 'vclamp', '-0.065 + (t>0.1 && t<0.2) * 0.02' ]], plotList = [ ['soma', '1', '.', 'Vm', 'Soma membrane potential'], ['soma', '1', 'vclamp', 'current', 'Soma holding current'], ] ) rdes.buildModel() moose.reinit() moose.start( 0.3 ) rdes.display()
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ishanseth18
dilawar
most recent documentation at https://moose.ncbs.res.in/readthedocs/user/py/rdesigneur/rdes.html#bare-rdesigneur-single-passive-compartment does not support example methods for redesigneur.
Through some of my own changes to the code given I was able to get expected results up to ex2.0_currentPulse.py, however past that point I am not able to get the results that are shown in the documentation. This is because fields "vclamp" and "current" are coming up as unknown.
Below is the code I am having trouble with.
import moose import rdesigneur as rd rdes = rd.rdesigneur( stimList = [['soma', '1', '.', 'vclamp', '-0.065 + (t>0.1 && t<0.2) * 0.02' ]], plotList = [ ['soma', '1', '.', 'Vm', 'Soma membrane potential'], ['soma', '1', 'vclamp', 'current', 'Soma holding current'], ] ) rdes.buildModel() moose.reinit() moose.start( 0.3 ) rdes.display()