Add more statistics for instances

BiaPyX / BiaPy

Open source Python library for building bioimage analysis pipelines

https://BiaPyX.github.io

MIT License

116 stars 28 forks source link

Closed danifranco closed 6 months ago

danifranco commented 8 months ago

Add more statistics for instances in remove_by_properties function. Changes need to be made:

Add a variable to calculate stats. Now remove_by_properties function is only called when some filtering is applied (TEST.POST_PROCESSING.REMOVE_BY_PROPERTIES).
Calculate perimeter (necessary for sphericity)
Calculate sphericity (for 3D). Here is the formula.

danifranco commented 6 months ago

Implemented in c720318 using same formulas as in MorphoLibJ but using scikit-image functions.