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BiaPyX / BiaPy

Open source Python library for building bioimage analysis pipelines
https://BiaPyX.github.io
MIT License
123 stars 28 forks source link

Incorporate Zarr/H5 as a source of training data #36

Closed danifranco closed 5 months ago

danifranco commented 10 months ago

Currently, Zarr/H5 are only considered for inference. We can read test images as Zarr/H5 and create also images in those formats using TEST.BY_CHUNKS variable. The idea is to support training data as well composed by these datatypes, not only multiple images but entire datasets stored in just one file.

danifranco commented 5 months ago

Merged train_with_zarr_h5 branch into master in commit 2f05bb1, which implements the option to train with Zarr/H5 files.