BiaPyX / BiaPy

Open source Python library for building bioimage analysis pipelines
https://BiaPyX.github.io
MIT License
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Support for patching over multiple datasets in Zarrs #82

Closed Mohinta2892 closed 2 weeks ago

Mohinta2892 commented 1 month ago

Hello Dani!

Please can you extend the support for loading and patching from multiple datasets (such as labels and raw) stored within one zarr.

The zarr organisation may look like:

 filename.zarr
       - volumes
              - raw
              - labels
                   - neuron_ids

The datasets may also have associated attributes, such as offsets (for labels) and image resolution ( for raw).

An example can be found here

Best, Samia

danifranco commented 1 month ago

Hello!

Just done in e0dfa47. Feel free to close the issue.

Best, Dani

danifranco commented 2 weeks ago

I'm closing this Samia. Feel free to reopen again te issue if you want to add something else.