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BigDataBiology / SemiBin

SemiBin: metagenomics binning with self-supervised deep learning
https://semibin.rtfd.io/
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Error: provided pretrained model only used in single-sample binning! #172

Open yazhinia opened 1 month ago

yazhinia commented 1 month ago

Hi, I am using SemiBin2 single_easy_bin command with pretrained model and 10 samples. I get an error that provided pretained model (global or ocean) only used in single-sample binning!.

Is it expected?

Thank you.

Best, Yazhini

luispedro commented 1 month ago

Yes, as of now, pretrained models can only be used for single-sample binning. This is because the model depends on the number of samples and we'd have to have a pretrained model for 10 samples (and another for 11 samples and another for 12 sample, &c)

yazhinia commented 1 month ago

Thank you for the reply. So If I understand correctly that I have to run SemiBin(2) with training mode if I have more than 1 samples for the dataset.

luispedro commented 1 month ago

Yes, that is a current limitation