Thank you for developing such an excellent tool. I am using ONT reads for binning contigs. I got some warnings that might not matter but I wonder what's going on.
/data/workdir/huwa/software/miniconda3/envs/semibin/lib/python3.12/site-packages/sklearn/neighbors/_base.py:246: EfficiencyWarning: Precomputed sparse input was not sorted by row values. Use the function sklearn.neighbors.sort_graph_by_row_values to sort the input by row values, with warn_when_not_sorted=False to remove this warning.
warnings.warn(
The command I used is as follows:
/data/workdir/huwa/software/miniconda3/envs/semibin/bin/SemiBin2 single_easy_bin --environment mouse_gut -i edge -b edge.bam --compression none -t 35 --sequencing-type long_read -o semibin_output
Thank you for developing such an excellent tool. I am using ONT reads for binning contigs. I got some warnings that might not matter but I wonder what's going on.
The command I used is as follows:
/data/workdir/huwa/software/miniconda3/envs/semibin/bin/SemiBin2 single_easy_bin --environment mouse_gut -i edge -b edge.bam --compression none -t 35 --sequencing-type long_read -o semibin_output