ENH Get amino acid file for argannot rather than nucleotide file

BigDataBiology / argNorm

ARG normalization by mapping to the ARO ontology.

MIT License

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ENH Get amino acid file for argannot rather than nucleotide file #36

Closed Vedanth-Ramji closed 5 months ago

Vedanth-Ramji commented 5 months ago

ARG-ANNOT is comprised of coding sequences. The data wasn't being handled properly before as contig mode was used when passing coding sequences to RGI. Now, the amino acid version of ARG-ANNOT is used with protein mode when running the database in RGI.

luispedro commented 5 months ago

ARG-ANNOT is comprised of coding sequences. The data wasn't being handled properly before as contig mode was used when passing coding sequences to RGI. Now, the amino acid version of ARG-ANNOT is used with protein mode when running the database in RGI.

Please rewrite history to put this info in the commit message and not just in the PR

luispedro commented 5 months ago

I merged, but then realised that this should have been in the CHANGELOG as well

Vedanth-Ramji commented 5 months ago

I'll add that right now