ADD missing ARO mappings to manual curation

Vedanth-Ramji commented 5 months ago

Additions:

argannot_curation: (Phe)cpt_strepv:U09991:AAB36569:1412-1948:537 -> ARO: 3000249
megares_curation: MEG_2114 -> ARO: 3000249, MEG_2430 -> ARO: 3000016, MEG_985 -> ARO: 3000229, MEG_2865 -> ARO:3000387, MEG_7974 -> ARO:3000076
sarg_curation: AM180355.1.gene2260.p01 -> ARO: 3000250
resfinder_curation: dldHA2X_1_AL939117 -> ARO:3003970, grdA_1_QJX10702 -> ARO:3007382, EstDL136_1_JN242251 -> ARO:3000387
resfinderfg_curation: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase|KF629588.1|pediatric_fecal_sample|CYC -> ARO:3003970
deeparg_curation: gi:447201629:ref:WP_001278885.1:|FEATURES|cob(I)alamin_adenolsyltransferase|unclassified|cob(I)alamin_adenolsyltransferase -> ARO:0010004

luispedro commented 5 months ago

Right now, the resfinder table has a column for Description, but none of the other ones do. Ideally, this would be more common, but maybe we can start adding descriptions for the new entries going forward?

Vedanth-Ramji commented 4 months ago

I have gone ahead and added the descriptions for the updated manual curation files

luispedro commented 4 months ago

Looks good. Can you rebase on the current main?

Vedanth-Ramji commented 4 months ago

I have gone ahead and rebased the commits. It should be ready to merge now

BigDataBiology / argNorm

ADD missing ARO mappings to manual curation #48