How to prepare stLFR data

BilkentCompGen / valor

variation discovery using long range information in linked-reads

BSD 3-Clause "New" or "Revised" License

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How to prepare stLFR data #10

Open wdecoster opened 4 years ago

wdecoster commented 4 years ago

Hi,

I have some stLFR data which I would like to use with VALOR2 and wonder how I should prepare the bam. Based on the manuscript I can use bwa-mem, but then I guess I should move the unique barcodes to a bam tag?

Thanks, Wouter

calkan commented 4 years ago

it should be the BX tag in BAM; but I am pinging @f0t1h for implementation details.