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BimberLab
/
cellhashR
An R package designed to demultiplex cell hashing data
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Update github action R and bioc versions
#146
bbimber
closed
6 days ago
0
chemistry argument default value
#145
sralchemab
closed
6 days ago
3
Improve discordant calls section
#144
bbimber
closed
2 months ago
0
Expand doublet filter checks
#143
bbimber
closed
2 months ago
0
Update doublet filter defaults
#142
bbimber
closed
2 months ago
0
Report the actual set of callers used for consensus
#141
bbimber
closed
3 months ago
0
Add check to flag/skip callers with high doublet rates
#140
bbimber
closed
3 months ago
0
Cran availability
#139
mari-ga
closed
7 months ago
2
Update Docker base image
#138
bbimber
closed
8 months ago
0
Update docker to use release-specific install_bioc_sysdeps.sh
#137
bbimber
closed
8 months ago
0
Update actions/checkout and actions/cache
#136
bbimber
closed
9 months ago
0
Remove special-case for seurat object install
#135
bbimber
closed
9 months ago
0
Add additional QC Violin plots
#134
bbimber
closed
12 months ago
0
Relax Seurat version requirement
#133
bbimber
closed
10 months ago
0
Seurat version and multiseq error
#132
michaelplynch
closed
10 months ago
3
Update to SeuratObject 5.x
#131
bbimber
closed
1 year ago
0
Use fixed Seurat version
#130
bbimber
closed
1 year ago
0
Limit to seurat 4.4.0
#129
bbimber
closed
1 year ago
0
Crashdown while run
#128
leethargic
closed
10 months ago
3
Remove duplicate colnames() from demixmix
#127
bbimber
closed
1 year ago
0
No HTO/GEX overlap in demuxmix
#126
wlason
closed
1 year ago
7
Update docker image to 3.17
#125
bbimber
closed
1 year ago
0
Add try/catch to demuxmix plot
#124
bbimber
closed
1 year ago
0
Update bioconductor versions
#123
bbimber
closed
1 year ago
0
Fully support 10x multi-assay data
#122
bbimber
closed
1 year ago
0
seurat hto demux fails when i run GenerateHashingCalls with demuxem and htodemux
#121
deevdevil88
closed
1 year ago
2
Object 'normedres' not found
#120
mbassalbioinformatics
closed
1 year ago
1
Support filtering of HTOs during CallAndGenerateReport
#119
bbimber
closed
1 year ago
0
Error and fail for CallAndGenerateReport
#118
mbassalbioinformatics
closed
1 year ago
7
Simplify arguments to provide h5file
#117
bbimber
closed
1 year ago
0
GenerateCellHashingCells not recognising rawFeatureH5
#116
mbassalbioinformatics
closed
1 year ago
2
Allow import of 10x data with multiple assays
#115
bbimber
closed
1 year ago
0
Error in barcodeData; Incorrect number of dimensions
#114
mbassalbioinformatics
closed
1 year ago
5
Try to revert prior numpy version now that pegasys is updated
#113
bbimber
closed
1 year ago
0
Add support for demuxmix
#112
bbimber
closed
1 year ago
0
Update default for hashedDrops confident.min
#111
bbimber
closed
1 year ago
0
do i provide HTO couts from the filterered or raw cellranger outputs
#110
deevdevil88
closed
1 year ago
5
Add option to skip tSNE plots
#109
bbimber
closed
1 year ago
0
Update sklearn to fix gmmdemux install
#108
bbimber
closed
1 year ago
0
Switch to ubuntu 22.04 in CI
#107
bbimber
closed
2 years ago
0
Update docker github workflow
#106
bbimber
closed
2 years ago
0
Control memory and core usage?
#105
lucygarner
closed
1 year ago
4
Update github actions
#104
bbimber
closed
2 years ago
0
Add additional QC plot
#103
bbimber
closed
2 years ago
0
Error running demuxEM - h5py.h5o.open" [29] "KeyError: \"Unable to open object (object 'shape' doesn't exist)
#102
lucygarner
closed
2 years ago
3
Can plots from GenerateCellHashingCalls automatically be saved to pdf?
#101
lucygarner
closed
2 years ago
8
Changing positive quantile for HTODemux
#100
lucygarner
closed
2 years ago
2
Error in GenerateCellHashingCalls(barcodeMatrix = hashtag_counts, methods = methods) : Unknown method: bff_threshold
#99
lucygarner
closed
2 years ago
2
Improve caller accuracy reporting
#98
bbimber
closed
2 years ago
0
Add new option to discard callers with high disagreement from majority
#97
bbimber
closed
2 years ago
0
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