issues
search
BimberLab
/
nimble
nimble — execute lightweight, flexible alignments on arbitrary reference libraries
MIT License
1
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Awareness of temp files
#20
bbimber
closed
3 years ago
1
Create basic Dockerfile
#19
bbimber
closed
3 years ago
1
Tool should log version and aligner version when running
#18
bbimber
opened
3 years ago
0
Download data from genbank
#17
hextraza
closed
3 years ago
1
Support .zip files
#16
hextraza
closed
3 years ago
1
Don't copy sequence data to reference library
#15
hextraza
closed
3 years ago
1
If a filter creates multiple rows of the same read, it should collapse down to one row
#14
hextraza
closed
3 years ago
1
Allow for chained filters via library.json config
#13
hextraza
closed
3 years ago
1
immunogenotyper -> nimble
#12
bbimber
closed
3 years ago
0
Fix reporting
#11
hextraza
closed
3 years ago
0
Single reference.json instead of also needing a reference.fasta
#10
hextraza
closed
3 years ago
0
Download aligner to package dir
#9
hextraza
closed
3 years ago
0
Test os.path.realpath
#8
hextraza
closed
3 years ago
0
Include pandas dependency in setup.py
#7
hextraza
closed
3 years ago
0
Fix imports for release package
#6
hextraza
closed
3 years ago
0
Dev
#5
hextraza
closed
3 years ago
0
Filtering
#4
hextraza
closed
3 years ago
0
Add reference library to the reference.json instead of requiring the aligner to receive both reference.fasta and reference.json
#3
hextraza
closed
3 years ago
1
Implement collapse of ambiguous reads from the aligner
#2
hextraza
closed
3 years ago
1
Mvp
#1
hextraza
closed
3 years ago
0
Previous