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BinPro / CONCOCT

Clustering cONtigs with COverage and ComposiTion
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clustering_gt1000.csv contigs suffixed with .0, .1, ... #185

Closed ghost closed 4 years ago

ghost commented 6 years ago

I assembled the contigs using megahit and then binned them using concoct, however i see that there are entries in the clustering_gt1000.csv that correspond to the actual_contig_name k141_4933 suffixed with .0, .1, .2? What do they mean as there are no contigs with those suffixes in the contigs file.

k141_4933.0 | 4 k141_4933.1 | 4 k141_4933.2 | 14

Thank you.

alneberg commented 4 years ago

These suffices are added by the cut_up_fasta.py script and correspond to the different parts of the original contigs. The clustering of the original contigs can be retrieved using the merge_cutup_clustering.py script.