Numpy/pandas warnings: RuntimeWarning: numpy.dtype size changed

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Clustering cONtigs with COverage and ComposiTion

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Numpy/pandas warnings: RuntimeWarning: numpy.dtype size changed #202

Closed alneberg closed 4 years ago

alneberg commented 5 years ago

RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. . Expected 96, got 88

alneberg commented 5 years ago

I think this has to do with a mismatch of numpy version installed compared to the version of numpy used by pandas when compiling. It started showing up due to the switch from conda (which keeps exact track of dependencies) to pip (which is instead much faster for installation). From what I read (need to look into this further) it seems safe to ignore.

alneberg commented 5 years ago

This warning is apparently safe to ignore: https://github.com/ContinuumIO/anaconda-issues/issues/6678#issuecomment-337276215

I will try to filter away these warnings so that users won't be worried.

alneberg commented 4 years ago

Changed title to help users find this if needed. Closing it as I've haven't seen it for a long time.