concoct_refine fails under python3

BinPro / CONCOCT

Clustering cONtigs with COverage and ComposiTion

Other

119 stars 48 forks source link

concoct_refine fails under python3 #243

Closed snurk closed 4 years ago

snurk commented 5 years ago

After installing of v1.0.0 via conda I'm getting the following error trying to run concoct_refine.

concoct_refine -h
  File "/home/snurk/miniconda3/envs/concoct_new/bin/concoct_refine", line 67
    print "Run CONCOCT for " + str(k) + "with " + str(NK) + "clusters" + " using " + str(args.threads) + "threads"
SyntaxError: invalid syntax

binnisb commented 5 years ago

You can probably add parentheses at the print statement if you are using python3.

alneberg commented 5 years ago

Ah, yes that's a typical python 2 to 3 error which is our fault... Will try to fix this as soon as possible, but will probably take some time to get it into the conda package.

alneberg commented 4 years ago

Fixed in develop version as of #254