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BinPro / CONCOCT

Clustering cONtigs with COverage and ComposiTion
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ImportError: cannot import name GMM #252

Closed jolespin closed 4 years ago

jolespin commented 4 years ago

Can you update the GMM to https://scikit-learn.org/stable/modules/generated/sklearn.mixture.GaussianMixture.html so we don't have to downgrade sklearn to 0.19? 


(metagenomics_env) -bash-4.1$ concoct --version
Traceback (most recent call last):
  File "/usr/local/devel/ANNOTATION/jespinoz/anaconda3/envs/metagenomics_env/bin/concoct", line 10, in <module>
    from concoct.cluster import cluster
  File "/usr/local/devel/ANNOTATION/jespinoz/anaconda3/envs/metagenomics_env/lib/python2.7/site-packages/concoct/cluster.py", line 4, in <module>
    from sklearn.mixture import GMM
ImportError: cannot import name GMM
jolespin commented 4 years ago

I just realized I'm using version 0.4.0