In the evaluate output section of your readthedocs side you mention those two files
concoct-output/pca_means_gt1000.csv -r concoct-output/pca_variances_gt1000_dim
in this line
Rscript $CONCOCT/scripts/ClusterPlot.R -c concoct-output/clustering_gt1000.csv -p concoct-output/PCA_transformed_data_gt1000.csv -m concoct-output/pca_means_gt1000.csv -r concoct-output/pca_variances_gt1000_dim -l -o evaluation-output/ClusterPlot.pdf
but those two files are nowhere to be found in my concoct output directory
In the evaluate output section of your readthedocs side you mention those two files
concoct-output/pca_means_gt1000.csv -r concoct-output/pca_variances_gt1000_dimin this lineRscript $CONCOCT/scripts/ClusterPlot.R -c concoct-output/clustering_gt1000.csv -p concoct-output/PCA_transformed_data_gt1000.csv -m concoct-output/pca_means_gt1000.csv -r concoct-output/pca_variances_gt1000_dim -l -o evaluation-output/ClusterPlot.pdfbut those two files are nowhere to be found in my concoct output directory