I was able to make concoct_coverage_table.py. But I unable to run the command " concoct --composition_file C1_contigs_10K.fa --coverage_file coverage_table.tsv -b concoct_output/"
upon running the command it gives an error message
Traceback (most recent call last):
File "/home/emgl/anaconda2/envs/concoct_env/bin/concoct", line 6, in
import vbgmm
ImportError: libmkl_rt.so: cannot open shared object file: No such file or directory
This error code also comes upon running the command concoct -h
Kindly help me resolving the issue
Thank you in advance
Dear Sir I installed the concoct using the command line
conda config --add channels defaults conda config --add channels bioconda conda config --add channels conda-forge conda create -n concoct_env python=3 concoct
I was able to make concoct_coverage_table.py. But I unable to run the command " concoct --composition_file C1_contigs_10K.fa --coverage_file coverage_table.tsv -b concoct_output/"
upon running the command it gives an error message Traceback (most recent call last): File "/home/emgl/anaconda2/envs/concoct_env/bin/concoct", line 6, in
import vbgmm
ImportError: libmkl_rt.so: cannot open shared object file: No such file or directory
This error code also comes upon running the command concoct -h
Kindly help me resolving the issue Thank you in advance