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BinPro / CONCOCT

Clustering cONtigs with COverage and ComposiTion
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CONCOCT 1.1.0 does not install via conda #310

Open gregvonkuster opened 2 years ago

gregvonkuster commented 2 years ago

https://github.com/bioconda/bioconda-recipes/issues/32800

vinisalazar commented 2 years ago

Related to this issue: when I'm on OS X, version 0.4.2 of CONCOCT is installed via conda. Version 1.1.0 is correctly installed on Linux.

I noticed that the Anaconda page of the package confirms this. Would there be a way to patch the recipe so v1.1.0 is installed on OS X? My workaround so far has been manually installing from the GitHub repo, but that is highly impractical.

Thank you!

gregvonkuster commented 2 years ago

I had to downgrade to CONCOCT version 1.0.0 which, unfortunately requires a very old pandas version - 0.19.2. However, this old version installs and works correctly, at least with the testing I've done.

The conda recipe for the CONCOCT 1.1.0 is just broken. It seems to be missing some version of the mkl package and attempting to add it results in too many conflicts to deal with. I've tried using mkl version going back about 8 times, but with no luck.